#!/usr/bin/env bash
# -------- REQUIREMENTS: ---------
#  You must define your MOLTEMPLATE_PATH environment variable
#  and set it to the "common" subdirectory of your moltemplate distribution.
#  (See the "Installation" section in the moltemplate manual.)

# Create the coordinates of the atoms using PACKMOL

packmol < mix_lipids+water.inp



# run moltemplate

moltemplate.sh -xyz system.xyz system.lt

# Optional:
# The "./output_ttree/" directory is full of temporary files generated by 
# moltemplate.  They can be useful for debugging, but are usually thrown away.
rm -rf output_ttree/